Genotypic and
phenotypic dissection of Xanthomonas oryzae pv. oryzae on Indica rice
cultivars for bacterial blight resistance
J. Kumar1,2,
A. Hussain3, P. Singh1,4*, S.K.Y. Baksh1,
M.K. Kar1, A.K. Mukherjee5, N.R. Singh2, B.
Sinha3, Pramesh Kh.3, N. Singh K.3 and J.N.
Reddy1
1Division of Crop
Improvement, ICAR-National Rice Research Institute (ICAR-NRRI), Cuttack-753
006, India
2Department of
Biotechnology, Ravenshaw University, Cuttack– 753 006, India
3Department of
Genetics and Plant Breeding, Central Agricultural University, Imphal-791 103,
India
4Department of
Plant Breeding and Genetics, Veer Kunwar Singh College of Agriculture (Bihar
Agricultural University), Buxar-802 136, India
5Division of Plant
Protection, ICAR-National Rice Research Institute (ICAR-NRRI), Cuttack-753
006, India
*Corresponding Author Email : prakash201288@gmail.com
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Abstract
Aim:
To evaluate the level of virulence of different Xoo isolates/ pathotypes of
Eastern and North-eastern India and to identify the suitable donors in rice
cultivars having various R-gene combination against virulent Xoo races of Bacterial
Blight disease of rice.
Methodology: Thirty six Xoo isolates were collected from
different places of Eastern and North-eastern India and genetic diversity/
similarity was examined by genotyping of pathotypes using JEL1/JEL2 markers.
The 34 Indica rice cultivars carrying different R-gene combination were
selected and grown in net house and inoculated artificially with Xoo
inoculants from these races/ isolates bacterial of blight disease.
Results:
The selected 36 Xoo isolates of Eastern and North-eastern India were grouped
into seven different isolates/ races based on their genetic diversity using
JEL1/JEL2 markers. Among 34 Indica rice cultivars, three or more R-gene
combination (xa5 + xa13 + Xa21 and/or Xa4 + xa5 + xa13 + Xa21)
cultivars exhibited highly resistant as compared to cultivars with single and
double gene combination cultivars against most of the Xoo isolates/ races.
Interpretation: The cultivars may determine different
level of resistance due to complementary effect of inheritance of suitable
R-gene combination. Identified donors may be used for rice resistance
breeding programme for Eastern and North-eastern India.
Key words: Bacterial blight, Genetic diversity, Indica rice,
Pathotyping, Resistant gene
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