JEB logo

Journal of Environmental Biology

pISSN: 0254-8704 ; eISSN: 2394-0379 ; CODEN: JEBIDP
About Journal
    Home
    Obituary: Dr. R. C. Dalela
    Editorial Board
    Reviewer Panel
    Publication Policies
    Guidelines for Editors
    Guidelines for Reviewers
    Abstracting and Indexing
    Subscription and Payments
    Contact Journal
    About Triveni Enterprises
 
Read Journal
    Current Issue
    Journal Archives
 
For Authors
    Guidelines for Authors
    Terms and Conditions
    Fees and Payments
    Track Paper Status
 

Google Search the Journal web-site:


    Abstract - Issue May 2011, 32 (3)                                     Back


nstantaneous and historical temperature effects on a-pinene

Use of EST database markers from M. truncatula in the

transferability to other forage legumes

 

Author Details

 

Amaresh Chandra

(Corresponding author)

Crop Improvement Division, Indian Grassland and Fodder Research Institute,

Jhansi - 284 003, India

e-mail: amaresh62@yahoo.com

 

 

Publication Data

Paper received:

11 December 2008

 

Revised received:

31 March 2010

 

Accepted:

19 April 2010

 

Abstract

In general tropical forage legumes lack microsatellites or simple sequence repeat (SSR) markers. Development of genic SSR markers from expressed sequence tagged (EST) database is an alternate and efficient approach to generate the standard DNA markers for genome analysis of such crop species. In the present paper a total of 816 EST-SSRs containing perfect repeats of mono (33.5%), di (14.7%), tri (39.3%), tetra (2.7%), penta (0.7%) and hexa (0.4%) nucleotides were identified from 1,87,763 ESTs of Medicago truncatula. Along with, 70 (8.5%) SSRs of a compound type were also observed.? Seven primer pairs of tri repeats were tested for cross transferability in 19 accessions of forage legumes comprising 11 genera.? At two different annealing temperatures (55 and 60oC) all primer pairs except AJ410087 reacted with many accessions of forage legumes. A total of 51 alleles were detected with six M. truncatula EST-SSRs primer-pairs against DNA from 19 accessions representing 11 genera where number of alleles ranged from 2 to 13. The cross-transferability of these EST-SSRs was 40.6% at 55oC and? 32.3% at 60oC annealing temperature. 24 alleles of the total 50 (48%) at 55oC and 27 of 51 (53%) at 60oC were polymorphic among the accessions. These 27 polymorphic amplicons identified could be used as DNA markers. This study demonstrates the developed SSR markers from M. truncatula ESTs as a valuable genetic markers and also proposes the possibility of transferring these markers between species of different genera of the legumes of forage importance. It was evident from the results obtained with a set of Desmanthus virgatus accessions where Sequential Agglomerative Hierarchical and Nested (SAHN) cluster analysis based on Dice similarity and Unweighted Pair Group Method with Arithmetic mean Algorithm (UPGMA)? revealed significant variability (24 to 74%) among the accessions.? High bootstrap values (>30) supported the nodes generated by dendrogram analysis of accessions.

 

Key words

Forage legume, EST-SSRs, Genetic resources, Medicago truncatula, Transferability ?

 

Copyright ? 2011 Triveni Enterprises. All rights reserved. No part of the Journal can be reproduced in any form without prior permission. Responsibility regarding the authenticity of the data, and the acceptability of the conclusions enforced or derived, rest completely with the author(s).